PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00092115001
Common NameGSBRNA2T00092115001, LOC106385876, LOC106432328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 225aa    MW: 23680.8 Da    PI: 7.0448
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00092115001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.24.5e-41151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll+++pe++r da+ s+++eA+ r+rdP+yG+v++i +lqqq+ +
  GSBRNA2T00092115001  15 PCGACKFLRRKCVPGCIFAPYFDSDQgAAHFAAVHKVFGASNVSKLLHHIPEHKRADAVVSICFEAQSRLRDPIYGCVSHIVSLQQQVVS 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l++el++++++
  GSBRNA2T00092115001 105 LQNELSYVQAH 115
                          *******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.33914116IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-3915113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSSGSPSSS GGGGPCGACK FLRRKCVPGC IFAPYFDSDQ GAAHFAAVHK VFGASNVSKL  60
LHHIPEHKRA DAVVSICFEA QSRLRDPIYG CVSHIVSLQQ QVVSLQNELS YVQAHLATLE  120
LPQPPPATVT SSGSLPPLSI SDLPTITPSM YDLSPILEPI SSTWPMQQQP RPSDHLFGVS  180
QSSSIGGGGE FQAIAREFLH GGQMSAHQPP PETGGSAPTV IKRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619585.11e-162PREDICTED: LOB domain-containing protein 30-like
RefseqXP_013681231.11e-162PREDICTED: LOB domain-containing protein 30-like
RefseqXP_013728621.11e-162PREDICTED: LOB domain-containing protein 30-like
SwissprotO813231e-115LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A078JTH01e-162A0A078JTH0_BRANA; BnaCnng65080D protein
TrEMBLA0A0D3AS301e-162A0A0D3AS30_BRAOL; Uncharacterized protein
STRINGBra008514.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.19e-94LBD family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]